Mon Jul 4 00:02:41 2022
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MOLecular BIology Tospovirus
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Comparative Genomics
Segment Wise Comparison
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Sequence Wise Comparison
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Blast
Sequence Retrieval
Blastn
    
Blastp
    
Blastx
BlastP
Search protein databases using a protein query
Input Query
Enter Protein Sequnce in FASTA Format
Or, Upload a file:
Query Location: Start :
      End :
Database
Program                    :Protein Blast
Choose Dataset       :
Viral Proteins
Protein Data Bank
Non-redundant protein sequences (nr)
Reference proteins (refseq_protein)
UniProtKB/Swiss-Prot(swissprot)
Patented protein sequences(pat)
Protein Data Bank proteins(pdb)
Metagenomic proteins(env_nr)
Transcriptome Shotgun Assembly proteins (tsa_nr)
Tospoviruses Protein Database
Program - Task
Position-Specific Iterated BLAST(PSI-BLAST)
Pattern Hit Initiated BLAST(PHI-BLAST)
Domain Enhanced Lookup Time Accelerated BLAST(DELTA-BLAST)
Optimize for Somewhat similar sequences (blastp)
General Parameter
Maximum Target Sequence in alignment :
5
50
100
250
500
Expect Threshold:
Word Size:
3
2
Maximum matches in a query range:
Scoring Parameters
Match/Mismatch scores:
1,-1
1,-2
1,-3
1,-4
2,-3
4,-5
Matrix:
PAM30
PAM70
PAM250
BLOSUM80
BLOSUM62
BLOSUM45
BLOSUM50
BLOSUM90
Gap Cost:
Linear
Existence: 4 Extension: 4
Existence: 2 Extension: 4
Existence: 0 Extension: 4
Existence: 3 Extension: 3
Existence: 6 Extension: 2
Existence: 5 Extension: 2
Existence: 4 Extension: 2
Existence: 2 Extension: 2